The deaths were recorded out of the 2344 cases confirmed as of Saturday, the health ministry said on Monday, with the new fatalities recorded from Friday into Saturday.
The Ebola outbreak that was declared in eastern Congo on May 15 is the fastest-growing Ebola outbreak on record.
The Bundibugyo virus responsible for the outbreak is less common than others that cause Ebola disease, and there is no approved vaccine or treatment.
Ebola is highly contagious and can be transmitted to people from wild animals.
It spreads in the human population through contact with bodily fluids such as vomit, blood or semen, and with contaminated surfaces and materials such as bedding and clothing.
The disease is rare but severe and often fatal.
The surge in deaths comes as safety fears have restricted the response in the worst-affected province of Ituri.
A total of five provinces have been affected, all in the eastern region where rebel violence is rampant.
At least 12 attacks - mostly fuelled by scepticism and rumours - have been recorded against health facilities and teams since the outbreak was declared in mid-May, authorities said on Saturday.
Many health workers, meanwhile, have walked off their jobs as they protest lack of payment.
At least 36 health workers infected with the virus have died.
The World Health Organisation expressed concerns that 80 per cent of new Ebola cases were emerging from unknown chains of transmission, a sign the outbreak is spreading faster than health officials can track despite an expanding response.
Congo's health ministry said in its latest update that 724 patients were in isolation and in hospitals, and that it was intensifying response efforts in affected health zones.
"Patient care and support capacities are consolidating, with 22 new recoveries recorded in 24 hours," the ministry said.
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